Published papers on project 1-03-171

• Paper in journal 0
  
• Mentorship 1
  
• Computer program 1
  
• Data base 2
  
• Invited lecture 11
  

1. Type of paper: Mentorship
   

   Title: The prediction of the membrane proteins secondary structure
   

   Authors:

   Lučić, Bono (184293)

   Juretić, Davor (19290)

   Trinajstić, Nenad (50450)

   Faculty: Prirodoslovno-matematički fakultet Sveučilište u Zagrebu
   Mentor: JURETIĆ DAVOR
   Date of defense: 12/22/95
   Number of pages: 66
   Author: Lučić Bono
   Degree level: M.A.
   

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2. Type of paper: Computer program
   

   Title: PREF-SP, PREF 2.0, PREF-SPLIT
   

   Authors:

   Juretić, Davor (19290)

   Programming language: FORTRAN
   Year: 1995
   Summary: A suite of FORTRAN programs that use preference functions method to predict transmembrane helical segments in integral membrane proteins: PREF-SP older version from Biopolymers paper in 1993, PREF 2.0 version with 2 states described in the masters degree thesis of Bono Lučić, and PREF-SPLIT or PREF 3.0 version with 3 states, whisch is the most recent versioin in 1995. All written in FORTRAN and can be used with DOS computers.
   

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3. Type of paper: Data base
   

   Title: CROPROT data baze of about 200 integral membrane proteins of known topology
   

   Authors:

   Juretić, Davor (19290)

   Base format: ASCII
   Number of entries: 200
   Summary: From SWISS-PROT data base version 29 and 31 a total of 168 integral membrane proteins with potential and probable transmembrane segments mostly in the helix conformation has been selected. Reference is included in each protein file in which authors propose 2-dimensional topology in the membrane based on experimantal evidence and hydrophobicity analysis.
   Keywords: integral membrane proteins, transmembrane segments, helices, topology
   

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4. Type of paper: Data base
   

   Title: JURAAS data base of about 100 amino acid attribute scales
   

   Authors:

   Juretić, Davor (19290)

   Base format: ASCII
   Number of entries: 100
   Summary: This data base is presently part of the SPLIT FORTRAN program for testing the prediction of transmembrane segments in integral membrane proteins. It contains about 100 scales of statistical, physical, chemical and mathematical amino acid attributes for 20 natural amino acids in proteins.
   Keywords: amino acids, hydrophobicity scales, statistical scales, chemical scales
   

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5. Type of paper: Invited lecture
   

   Title: Hydrophobicity preferences and secondary structure prediction for membrane proteins
   

   Authors:

   Juretić, Davor (19290)

   Pešić, Roko

   Institution: 1. Slovenian Symposium on Biophysics
   Year: 1992
   

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6. Type of paper: Invited lecture
   

   Title: The performance of nearest-neighbor algorithms in predicting protein secondary structure
   

   Authors:

   Lučić, Bono (184293)

   Lučić, Bono (184293)

   Trinajstić, Nenad (50450)

   Juretić, Davor (19290)

   Institution: MATH/CHEM/COMP 93
   Year: 1993
   

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7. Type of paper: Invited lecture
   

   Title: Learning from nature: Thze recognition of transmembrane segments in integral membrane proteins
   

   Authors:

   Juretić, Davor (19290)

   Lučić, Bono (184293)

   Trinajstić, Nenad (50450)

   Institution: V Brioni International Conferences
   Year: 1995
   

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8. Type of paper: Invited lecture
   

   Title: Improved sequence analysis with the Kyte-Doolittle preference functions
   

   Authors:

   Lučić, Bono (184293)

   Lučić, Bono (184293)

   Trinajstić, Nenad (50450)

   Juretić, Davor (19290)

   Institution: MATH/CHEM/COMP ' 95
   Year: 1995
   

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9. Type of paper: Invited lecture
   

   Title: Membrane proton pumps: topology and kinetics
   Institution: MATH/CHEM/COMP' 94
   Year: 1994
   

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10. Type of paper: Invited lecture
    

    Title: Predicting secondary structure of membrane proteins: Amino acid attributes and preference functions
    Institution: V International summer school on Biophysics
    Year: 1994
    

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11. Type of paper: Invited lecture
    

    Title: Life and death of cellular structures
    Institution: Zavod za znanstveni i umjetnički rad HAZU - Split
    Year: 1994
    

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12. Type of paper: Invited lecture
    

    Title: Structure and function of membrane proteins
    Institution: Društvo matematičara i fizičara Rijeke
    Year: 1991
    

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13. Type of paper: Invited lecture
    

    Title: Lectures on biophysics
    Institution: Accademia Leonardo
    Year: 1991
    

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14. Type of paper: Invited lecture
    

    Title: Structural and kinetic models for membrane ion pumps
    Institution: Godišnji sastanak hrvatskih biokemičara HB 94
    Year: 1994
    

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15. Type of paper: Invited lecture
    

    Title: Proteins that do not like water
    Institution: Podružnica hrvatskog fizikalnog društva u Splitu
    Year: 1995
    

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